Bee products, such as honey, pollen, royal jelly, and propolis, are widely recognized as nutritious and biologically active superfoods. However, variations in production practices, environmental conditions, and potential pollution risks have led to inconsistent quality, raising concerns among consumers. To advance industry standards, this Special Issue focuses on research related to the quality evaluation system of bee products. Key areas include nutritional composition analysis, the detection of harmful residues, and plant/geographical traceability studies. These innovative investigations will contribute significantly to ensuring the sustainable development of this vital industry.